Site Software User Guide Introduction Project details System requirements Software architecture New features of interest in release 0.9.0 Installing and Upgrading Overview Preparatory steps for new sites Backing up an existing Reciprocal Net site Installing GNU/Linux from scratch Downloading GNU/Linux updates Downloading additional software packages Customizing yum for automatic updates Customizing Firefox and the Java plug-in Downloading software updates (again) Customizing mail settings Customizing MySQL settings Customizing Tomcat settings Customizing Httpd settings Customizing Reciprocal Net site software Initializing Reciprocal Net site software Restoring data from a backup of an existing site Merging configuration files for an existing site Upgrading database schema at an existing site Synchronizing with the Reciprocal Net site network Conclusion Using the Site Software Terminology Initial administrative tasks Creating a new sample Importing metadata from CIF files Attached data files About chemical formulae About space group symbols About units of measure Administering the Site Software Web site customization Daemon startup order Ports and firewalls Backups Creating custom (locally-defined) metadata fields Configuring sample number auto-generation How your site interacts with the Site Network About recipnet.sitegrant files Configuration directives in recipnetd.conf Configuration directives in web.xml Format specification for .crt files Miscellaneous Technical support Development team Other contributors Acknowledgements License